rs39028135 SNP Detail

Summary

• ID
  rs39028135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83696332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAGGCAC ATCCTATAGG
  CTGGATGATT GACTGGGTGT TTCTTCATTG TATGCTTGAG TAAATCTACA CTTGATGTTA
  GGAGAGAGGT GCCCTCTGAA GGTAGAGGGC AAAGGTACGT TGTGAGTGGT CTCCCAAGAG
  ACCCTACAGG TCCTGGAGCA CCACCCTGAG GACCATAAAG TTCTGCATAC TCTTCCCTGC
  R
  GGACTTCTCA GCTTTGTTAT CTTTGAAAGT ACTGAAGGTG GAGGAACAGT GGACCCGGGA
  AACAAGAAAG CTCCAAGCTC ATCGTGTGGG CTGCCAACCA GACTCTGTTC TCCTAATGGA
  CCCCCTCTAC CAGAGAGCTA AAAAGGAAAC CTCTTTCTGC CTCCCCCTCC TTCCTTCTGT
  CTATCAACCC CTTCCCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51559292	NES14677644	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39028135					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559292	NES14677644	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83696332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13301	CpG island 13301	492 bp proximal
Gm7115	predicted gene 7115	700 bp upstream
Gm26771	predicted gene, 26771	within coordinates
Gm66689	predicted gene, 66689	249 bp upstream
Rr578903	regulatory region 578903	384 bp proximal
Rr578904	regulatory region 578904	904 bp proximal
Rr578905	regulatory region 578905	1207 bp proximal
Rr578906	regulatory region 578906	1336 bp proximal
Tssr33830	transcription start site region 33830	915 bp downstream
Tssr33831	transcription start site region 33831	948 bp downstream