rs39025853 SNP Detail

Summary

• ID
  rs39025853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90608431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAGCACA AGGCCTGAAG
  GATAAAGAAT AGGCCTCCTG GTTATTTTCT ATTCATTAAC CGTATGTGAT CAGCACTGGG
  TGCTACACCA AGGATACCAG CATCCGGTAA CATGCTTCAT AACAGATTCT ACTTAGAATC
  TTCTTGAAAA CTAGGAAAGT CAATAATATT GCTGTATATA ACTCCATGGT ATCTTCATCA
  Y
  ATGGACATCA CATATAAACT TTGTTTATAA TATACTACAT ATAGAAACTT TTTTCAGTAT
  TGACAGTTGA ATCACATGCA TCTAGGTGGG TGCTCTACCA GCCAGCTGTA GTTCCTGCTT
  TCTTTCTTTT TTTTTTTTTT TACTTATTAT TTTGAGACAA GGGCTTGCTC AGTTGCCCAG
  GCTGGCTTTG AACTCACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51361577	NES13741298	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39025853					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51361577	NES13741298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90608431 () rs orientation: forward

Symbol	Name	Function Class
Rr634261	regulatory region 634261	1527 bp distal
Rr634262	regulatory region 634262	1595 bp distal
Rr634263	regulatory region 634263	1377 bp distal
Rr634264	regulatory region 634264	1280 bp proximal
Slc41a3	solute carrier family 41, member 3	Intron