rs39023536 SNP Detail

Summary

• ID
  rs39023536
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:80832779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTTCTGT TTGTGCTGGA
  AAAGTCATCC TCTACTGGCC CCCTACCACT TTACCTCACA CCTGCCATGT AGTCAAAGTC
  TTTGCTACAA GCTCCTTATG GGATGTACTT CCAGAAGAAG ATGATGTGTG CATCTTAGCC
  AATGAGAAAA CCAAGGCTTA TAAATTCTAT GTAGCATCTC CTATGGACAT TGATCTATGT
  S
  GTGTCAGAAC TTGGATGTGA CCTTTGCTTA GGTCTGTCTA AAGCTAGAAG TCATAATGTT
  TCTGTCTCCA CGAATTTCAT TTCTGTTTCT GTAATACAAT ACCCTGAGAA TATCAGCTTA
  ATGAAAAACA GATTTATTTG GCTTGCAACT CTAGCTTACA ATCAATTATT GTGTGGAACT
  CAAGGTGGGA ACTTAAATCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51717802	NES14803540	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39023536					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51717802	NES14803540	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:80832779 () rs orientation: forward

Symbol	Name	Function Class
Gm66997	predicted gene, 66997	1849 bp downstream
Rr632540	regulatory region 632540	1115 bp proximal