rs39021116 SNP Detail

Summary

• ID
  rs39021116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152021413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTACCAAT CTGAAAAACA
  GAAAATATAA ATAAATACTG TCCCAAATAT CTAGACACAA GGAAGTGGAA GACCTTCCAC
  AATAACGGAA AGTTTCACTA CTATTCAGTG TTTTGTGAAC ACCCTTTCAA GGCCTCTCTC
  AAATGTGCCA TAAGTGTGCT TCGGGTTAAG CCCAGTCCAG CCAGCAGCAC AGAGCGGCAC
  Y
  GACGAGCCAC TGCTCTCTGG ACTGGGGAGG AGGCGTGCTG CCCTCTAGTG ACTCAACAGC
  ACAGACTGGG GAGGAGGCGT GCTGCCCTCT AGTGACAACA GCACAGTCAA CAAGAAGCCC
  CTCAGAGGTA GGAAATGTCC ATGCTGTTAG GAAAGAACTG ACCCAAGCCT TCATCTCATT
  GAGGAAACAT AACGTCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51059802	NES13424274	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C	T	T	C	T	T	T
ss136102263	ENSMUSSNP6677273	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs39021116					SNP	T	C	C	T	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51059802	NES13424274	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152021413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587523	regulatory region 587523			508 bp distal
Rr587524	regulatory region 587524			within coordinates
Rr587525	regulatory region 587525			35 bp proximal
Rr587526	regulatory region 587526			79 bp proximal
Rr587527	regulatory region 587527			498 bp proximal
Rr587528	regulatory region 587528			790 bp proximal