rs39020257 SNP Detail

Summary

• ID
  rs39020257
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123026397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGTTAGC TTGTAAAAGA
  AAACTTTCTC CAAGTCTTTA TAGAGAGATT TCTCCAAGGG GTTTGCCAAG AGACTGCCAG
  GGACCTGGCC ATGTAAGCAC ATGTCCCCAA AGAGAGTTTG ATAATGTGAA GACACCGACA
  TCGTTTTTCA TGAGGAAATT TGCAAACACA CATACAACGG GGTCTTCTGT CTAGATAAAC
  K
  TGCTCCAGGG ATGAGTTAAG AATCTGCTTT CCTGAAGAGT ATCCTTTGAG TGTGTGTTAC
  AAAGGCTTGC TTTGCATTAC AGATGTAGAG AAAAATACCA GTTACTTGGA CTTTAAGTTT
  TTCAGTTTAA ATGTCAATGA AAACGTTCAC TAAAATTCTT CTCTTTTTTA GGGTTCGTAT
  ACTGTTCAGT ATACCAGGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
ss51024678	NES13910139	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
rs39020257					SNP	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51024678	NES13910139	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123026397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr584473	regulatory region 584473			1300 bp proximal
Rr584474	regulatory region 584474			1930 bp proximal
Synpo2	synaptopodin 2			Intron
				Noncoding-Transcript-Variant