rs39019750 SNP Detail

Summary

• ID
  rs39019750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151952264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTCTCTT CAGACACACT
  AGAAGAGGGC ACCGGATCCC ATTACAGATG GTTGTGAGCC ACCATGTGGT TGCTGGGTTT
  TGAACTCAGG ACCTCTGGAA GAGCAGTCAG TGCTCTTAAC AGCTAAACCA TCTCTCCACC
  CCACCCCTTT TTTGTTCTTG ACACTGAGAT CTGGCCTAAA GAAATGTATC TTTCCAGAGA
  R
  GGATGGCAGT TTCCAGCCTT GTAAGCTAGC ATGGCATTAG TAATCATGTC TTTTCAACAC
  CAACTGAAGC AAATGCTGAC AAGTACCTGC TATTTGCACT CATCCTCTTC TACAGACTGC
  AGAGATGATA GGGTGGCTGT TCCTCCTCAG AGTCTAGTCA CTTCATTTAC ATGCTCTACA
  GACAGAATCC TTGGGCTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51060316	NES13426193	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39019750					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060316	NES13426193	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151952264 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	978 bp distal
Rr587499	regulatory region 587499	922 bp distal
Rr587500	regulatory region 587500	756 bp distal
Rr587501	regulatory region 587501	464 bp distal
Rr587502	regulatory region 587502	165 bp distal
Tssr36179	transcription start site region 36179	481 bp downstream
Tssr36180	transcription start site region 36180	559 bp downstream
Tssr36181	transcription start site region 36181	583 bp downstream
Tssr36182	transcription start site region 36182	598 bp downstream
Tssr36183	transcription start site region 36183	626 bp downstream
Tssr36184	transcription start site region 36184	1329 bp downstream
Tssr36185	transcription start site region 36185	1345 bp downstream
Tssr36186	transcription start site region 36186	1453 bp downstream
Tssr36187	transcription start site region 36187	1630 bp downstream
Tssr36188	transcription start site region 36188	1698 bp downstream
Tssr36189	transcription start site region 36189	1724 bp downstream
Tssr36190	transcription start site region 36190	1802 bp downstream