rs39018623 SNP Detail

Summary

• ID
  rs39018623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108447730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATAGGGA TGTGCACAGG AGCATAGAGA AGACAAACAA
  CCTCATTGCA GTAATCACTA CAACCATTTT TCCATTTTTG TCATCTGTGG AGTTATCATG
  Y
  GCGCTGTCCA TTGATGTGAG AGGAGAGCTT CATCCTAGCT AAGCCGCACG GAAGGCAGAG
  CGAGTGCTGC CCCAAGTTCA GCTGTTTCTT TGAAGTTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51813782	NES14768645	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	T	C	C	T	C	C	T	C
ss133503011	ENSMUSSNP6073604	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39018623					SNP	C	C	C	C	C	C	C	T	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51813782	NES14768645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108447730 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm35165	predicted gene, 35165			within coordinates
Gm44101	predicted gene, 44101			within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1			Intron
				Noncoding-Transcript-Variant
Rr636115	regulatory region 636115			1341 bp proximal
Rr636116	regulatory region 636116			1763 bp proximal
Tssr62385	transcription start site region 62385			880 bp downstream
Tssr62386	transcription start site region 62386			1767 bp downstream