rs39013959 SNP Detail

Summary

• ID
  rs39013959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121891654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGTGCAC GCTAGGTGAG
  CATTCTATAC CCCCTGTCCC CGCTTTTTAA TCCTGGTGTG AGGTACCCAC TGCAGCCTTT
  TACAATCACT GCCTCGTGTG ATCCTTAGAA TGAACCTCTG AAGTTGGGCA CAGCTCAAAT
  TACAGCAAAG GCAGCAGAAG CCACAGGGAA CAGCAAGAGG GGGTGGCATA GAGGATGGTC
  R
  GACCCCAACC CTGTGCTGTG CCTCTTCCCA AGGTGACAAG GGGGAAACCG GCTTGGAGGT
  TTTAAAATAG ATGTAAACAT TTGAGAACCT GCTGAATTCT GTGTTTCTCA GAGTATCAAG
  GTCCCCATCT AGGGAAACAC ATCAGGAAAT ATGACTATGA ATCAGCTGCC TGATTAAACA
  GCCAGGATGG AGCCCACGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51021984	NES13907978	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs39013959					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021984	NES13907978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121891654 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Rr584230	regulatory region 584230			538 bp distal
Rr584231	regulatory region 584231			1730 bp proximal