rs39011131 SNP Detail

Summary

• ID
  rs39011131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72594004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCAGCCCC GCCTTAGGGG
  TGGGGCTACC GGGCGACAGC AGCCGTTGTC TGTGTGTTCC GGTAGAGTGC CGGAAGTCAA
  GTCCAGCTCT TTATTCCCCC CCAAGTCCCT TCTGTTTCTC AGCAGTCTGC GGGGCTCGGC
  GATCTCGTTC TTGTTCACTT GGCCTCGTTT TTCGGAAGCT GTTGCGACCG GCAGGTGCTG
  Y
  GTCGCCTTCG CTGCTTATGA TGTAGGGTCG TGGGGCCGGG CGCCTCTTTG TCGCATCCTC
  TGCTCGTGTT TCCAACCTCT CCGTTGCCGA TGCTGCTTTC TCACTTCACA AACAAATGTA
  CTCTCTTCAG CACTTGCCCA TCTAGAAGCA AACACATTTC ATCCTGATCC TAATCCCTTT
  CTTGGCTGTA TCCAGGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51695106	NES14819734	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs39011131					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695106	NES14819734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72594004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	within coordinates
Gm20536	predicted gene 20536	831 bp downstream
Gm67593	predicted gene, 67593	within coordinates
Rr399708	regulatory region 399708	78 bp downstream
Rr632243	regulatory region 632243	1525 bp distal
Rr632244	regulatory region 632244	194 bp distal
Rr632245	regulatory region 632245	264 bp distal
Rr632246	regulatory region 632246	32 bp distal
Rr632247	regulatory region 632247	within coordinates
Tgoln1	trans-golgi network protein	21 bp upstream
Tssr57152	transcription start site region 57152	103 bp downstream
Tssr61478	transcription start site region 61478	265 bp upstream