rs38995739 SNP Detail

Summary

• ID
  rs38995739
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102029899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGCTGAA AAAAAAAAAA
  AAAAAAAAAA AGACGTGAAG CAGACATTAA AAGGCCTGGG AAGAAACCAC TGTTAGGAAC
  ACAGTTTGGG TCCAGGTTTT CACACACTGA GAAAACTATT CAACACAGTG GTCTTTCTTT
  CATGGATTCA ACGAATTCAT CTATTCATTT AGGAAGTATT TATTGAGTGA CTTCTTGGCT
  S
  CCAAAACACA ACAGTTTCAA GCAAGACATG CAATTGGCCC TGTAAAATTT AGAATTTAAT
  ATGAGAGAGA AATTGAAGGA GCAGAAAATT AGTAAAAACC CAAAAATAAA TAACAAATCA
  AGAAGTGAAT TATAAAGAGG GCGGGAGGAC ACGGCTACTG GTGTAGATGT GAAAATCAGT
  AGTTCCCAAC TGAAGTCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51587939	NES14668895	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38995739					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51587939	NES14668895	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102029899 () rs orientation: forward

Symbol	Name	Function Class
Casq2	calsequestrin 2	Intron
Rr582181	regulatory region 582181	1229 bp distal
Rr582182	regulatory region 582182	1480 bp distal
Rr582183	regulatory region 582183	238 bp distal
Rr582184	regulatory region 582184	383 bp distal
Rr582185	regulatory region 582185	318 bp distal