rs38991193 SNP Detail

Summary

• ID
  rs38991193
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152463845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAACTCTC CTTAGCCATA
  TCACAGACAG GCAGTTTTTA ATCTGCCGTC TTACCCGGAA ATCTTTTAAA GTTTAAAGTT
  TTTCTTTCTT CATGCCAAAT ATGTGTGCAT TCAGAGTGTG AACATTTAGA GTGGCGTGGG
  ACCGGAGCAT GTGTTGGGAA TAGCACATAC CGCCCGTCTC TCAGCAGTTT CCTGCACGTG
  W
  ACTTCCAGCC TGTGAGGAGT GTGTGAGGCC TGGAGTTGTA ACTGCTGTAG CTATGCTGCA
  TAAACATGAT ATATAGATTT AAATCACACC TAACTGAAGG GAAAGCTCTA ACTTACTCTA
  AAAATAAGGG AAGTTGATTA TGATTTTCTG TTTAGTGTGC ACACTATAAT TCATATTTTC
  TATATTACAG AAATGACTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51672662	NES14643765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38991193					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51672662	NES14643765	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152463845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587594	regulatory region 587594			1985 bp distal
Rr587595	regulatory region 587595			within coordinates
Rr587596	regulatory region 587596			349 bp proximal