rs38991181 SNP Detail

Summary

• ID
  rs38991181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152722533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCAAGGC TAGCCCCTAT
  GCATCCTCTT CACCCACAGG AGAACTTGGC TGCTCCTAAC AAAATCTTGA AACTCACAGA
  ACAATCTTGA AAGTGACTTC CTAGCAGGAA TAGAACTTCC TGTTGCATTA GGCCATGACG
  TTTGGCACCT GGTGTGGGTG ACTGTATTCT TGGCGTGCTA GGAGCTATTG AGCCTTAGCA
  R
  TTGGGTGTCT GCTAGAGTTC AGAGCCAATT TGGGGCTGAG TGAGACAGGT TAGGTTTGTA
  GGTAGGTTTG TGGTCCCTAC TGGCTGGTAG TGCATCTTCC TTCATTTCTA TTCTGTTTCC
  CTGTGTTATA TAGAATATAG TCCAGGAGGC TCACTTATTA TCTGAGCACC TCTCTCTTCA
  TTCAGTGTTG ATAAAGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51062502	NES13894504	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	G		A	G	G	G
ss136105641	ENSMUSSNP1420975	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss321029585	CHEV_3_152679860	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs38991181					SNP	A	A	A	A	A	A	A	G	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51062502	NES13894504	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152722533 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Rr587644	regulatory region 587644	1163 bp proximal