rs38983960 SNP Detail

Summary

• ID
  rs38983960
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36215138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGGTTG TAGTTTGCCA
  AAACCTTCTC CAGAGGGTAA ATTGTATTTC TTTACATTTT GTGATTTACA CATAATACAC
  CATTCCTCAT CAAGATCACA GAGTAGTGAA TTTTATGCCT TCCACCCACC ATGCTATGCT
  TATTCTAATG TTGTTATTCC CTGTGTTATG GAAGTGACAC GCCTTGATCT GCATTTCCAA
  M
  ACTCAGTGAT CACTTGTATG GTGAGACGAT TTAAAATCAT CAATCCATGT ATTTTTCATT
  TGGCTTGTTT GCTTTTGACT CATTGAAGAG TGAAATTTCT TTCTTATGTC ATTTTCTGTT
  TGCCTAAAAG ATTTCCTGTC ACATTTCCTT TAGTACGGAC CTGCTTGCTT TAAATTCCTG
  TGGATTCTGT TGATCTCATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51281847	NES13778701	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38983960					SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51281847	NES13778701	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36215138 () rs orientation: forward

Symbol	Name	Function Class
Gm57759	predicted gene, 57759	370 bp upstream
Gm67063	predicted gene, 67063	within coordinates
Rr628531	regulatory region 628531	633 bp proximal