rs38962756 SNP Detail

Summary

• ID
  rs38962756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146889701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGAGGAG TGCTTATACA
  GGGTTGCATT CCTCAGGGTA GGCAATGGTG CAGTCAGGAG GAGCGAGGCT GGAGTTTGCA
  CACATAGTTG TGGTAAAGAC TGGGGAGTTT CCCAAGAAGA AAGAAAGATT GCAGCGGAGA
  CTCAGAGCCA GGGTGGCATG AACCAGAAGT TGAACTTGGC TGGTGAAAAT AGCCCACATT
  R
  TGTAAAACGG AAATCAGCAA GAAAAGTATT CCCCTGAATG TTACCCAAAT GAGGGTACTG
  TTCAGCCATC AAGGCCTTCC TCACAGTGTT CTCGGCGGGC TGAATGGGAG CCACGGGAAA
  GGGGGAATCT TAGCACTCTG CTGCTTTGCT CTTTCAGTGC CCATTTGAAC CATTGCCCAG
  CTTGATTCTT AAAGCACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51050418	NES13900680	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38962756					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51050418	NES13900680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146889701 () rs orientation: forward

Symbol	Name	Function Class
Gm65492	predicted gene, 65492	within coordinates
Rr375882	regulatory region 375882	1365 bp downstream
Rr587134	regulatory region 587134	1330 bp distal
Rr587135	regulatory region 587135	898 bp distal
Rr587136	regulatory region 587136	within coordinates