rs38954019 SNP Detail

Summary

• ID
  rs38954019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8638108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCACGC AGAGCAAACC
  CCACTCTTGA TCCGTCAGCC CTGAAATCTC CGAGTCGGAC CAGGCACTCC CACGAGCATG
  TTCTCCGTAG TTACATGATC GGGCAGGCTC TCCCAGTCAC AGCCCAACAT CTGACGAAGA
  GCACCAGGAC ACTGACTGGA TTCAATTAGC CTCTCTCTGC CTGCTGCCTG ATCCCCTGGC
  Y
  GCTTGCTAAC TGTATAACTT GTAAGAAAGG CCTAAGTCAT CAGCTCTAAG CAAATCTCCT
  ATTCACCACA AGGAAAAAGG GAGTGTTGTG CATGGCCAAC AATCCCTGTT TTCACTGAGG
  AAGGCTCCCT GACCTCCTGC TGGCCTCAGT TCCTTAATTA CTGTCTATGG AATTCCAGAG
  AAAGAAAGAA AGAACGCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50810554	NES14204852	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38954019					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810554	NES14204852	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8638108 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr384117	regulatory region 384117			within coordinates
Rr427375	regulatory region 427375			894 bp distal
Rr427376	regulatory region 427376			within coordinates
Rr427377	regulatory region 427377			1160 bp proximal
Sash1	SAM and SH3 domain containing 1			Intron
				mRNA-UTR
Tssr3133	transcription start site region 3133			41 bp downstream
Tssr96639	transcription start site region 96639			1718 bp upstream
Tssr96640	transcription start site region 96640			85 bp upstream
Tssr96641	transcription start site region 96641			61 bp upstream
Tssr96642	transcription start site region 96642			30 bp upstream
Tssr96643	transcription start site region 96643			5 bp downstream
Tssr96644	transcription start site region 96644			107 bp downstream
Tssr96645	transcription start site region 96645			235 bp downstream