rs38947700 SNP Detail

Summary

• ID
  rs38947700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8105477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAATTGA ATTTTCCAGA
  TTGCTTATGT TAGACATAAA TACTAATCTA CTGGATACCA AAATATTTAA GAAACTATAT
  ATTATAACTT TTTGAAATAT AATAATAAAC AACTATTGAC CTGTGTTCTT AAGAATGATT
  CTTTGGATAG TCAAAGGTAT TTGATTTGCA AGGTCACTTT ATCTAACACA TTATTTTCAC
  K
  TTATAACAAA TTTAACAAAG ACAAATTTTA AAATTTAACC CAACAGTCAC TTACAATTTA
  GTGTCTATTG CTTTAGCTAA CTGCTTTCCT CTCTTTAAAT GTAGGCTGGC TGTTCATTGG
  TACCAAATGT TGGTCATGGT TGAAAAATGT AAGAATGAGA TGCCTAGATC ATGTGGCTAC
  AGATGGGAGC TCAGACCTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss51554637	NES14866334	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs38947700					SNP	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51554637	NES14866334	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8105477 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	224 bp distal
Rr626348	regulatory region 626348	528 bp distal
Rr626349	regulatory region 626349	329 bp proximal