rs38945934 SNP Detail

Summary

• ID
  rs38945934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131512570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGTTATG TTACCACATT
  AAAAGAACAG TAGTAATTGG ATTTTAAAAA TTCTTTATTT GCTGACTTTG TGTGTGTGTG
  TCCATCTTTG AGTGCAGTGT GCCTGTGCCT TGTGTGTGTG TGTCCATCTC CGAGTTCAGT
  GTGCCTGTGC CTTGGGGTAA GTGTAGAGGT AAGAGAACAA CTCAGAGAAG CTGGTTCTGC
  Y
  ATTCCACAAG TCAGGTTTCC AGGCCTGTAT GCAATTGACT ATACCTCCAT ATTACTGGCC
  CAATACAGGG ATTAAAATAG TTGGCATTAA TATAGTACTT TGTATGAGGA ACTATAGATT
  TAATATATAT ATTTTTCTAA TGAGTACTAG CTTCTGGATT GTGGATAGCC AAAACTAAGG
  TGGGGACAAG GATTTGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51638765	NES14654159	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38945934					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51638765	NES14654159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131512570 () rs orientation: forward

Symbol	Name	Function Class
Rr585382	regulatory region 585382	1418 bp proximal