rs38945721 SNP Detail

Summary

• ID
  rs38945721
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152774973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGCGTT TGCTAGCTGA
  CTCCTTTCTG AGTGTCACTT CCCTCTGTCC CAGCAATGAG CTCCTTCCAA ATCCTCCATG
  CTGGGCATGT TTTTATTATC TGTCCCTGTC CCTTCTGCTT GTCTTGCTCT TAAGACCATG
  TTTCCTTCCT TTCTGCATTC TGAACTAGAG AGCTTGCTTA AAATATCTAC AATGGGTAAT
  R
  TTTCTATTCA AGACTGGTTG CTGTTGGCCA CTGTTTGAGG CTTGGGACCA CAATGATATG
  TTACAACAAT AATCAGAGCC ATGCTGCCAC ACTGTGTGCA CAGAACTGTG AGCACACACA
  GACTGGGAAT CTTCTTAATG ACACAACCTT CCCCAGAAAC TAAGGCATGT GGGAACACAC
  ACAGAGGAAC ACAAAGCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51061784	NES13892915	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G		G	G	G	G		A
ss136105989	ENSMUSSNP441943	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss321029715	CHEV_3_152732300	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38945721					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51061784	NES13892915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152774973 () rs orientation: forward

Symbol	Name	Function Class
Gm16213	predicted gene 16213	within coordinates
Gm40182	predicted gene, 40182	within coordinates
Gm66501	predicted gene, 66501	814 bp upstream
Rr587647	regulatory region 587647	1798 bp proximal