rs38942088 SNP Detail

Summary

• ID
  rs38942088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102242285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCAGGA GCCCATTGTG
  TTGATGTTCA GGGTGGAGCT GAGAGACACT AGTGGTCGCT GCCTCCCAGT ATGATCATTC
  CTCCCAGCAG ATAGAAACAC TTGAAGGGAA GGTCAGAGCT CCTCGGGACC CACCACTCTG
  AGGCAGTTTT CCATTCATTC ATTCATTCGT TCATTCATTC ATTCCGCAGC CATGTATTGG
  R
  CATCTACTCC ATTATGAATA TATAAAAGCC ATAGGTATTT AAAAATGACT TCTTTCTTAT
  TTATTTATTT ATTTATTTAT TTATTTATTT ATTTATTTAT TTATTTCATG TGCTTGTATG
  TATAACATGT GAATGGAGCT GGCCACTGTT TACCTGTGGA GGTCAGAAGA CAATTAGCGG
  CATTTGGTTC TTGCTTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51585434	NES14664850	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38942088					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51585434	NES14664850	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102242285 () rs orientation: forward

Symbol	Name	Function Class
Rr582225	regulatory region 582225	293 bp proximal
Rr582226	regulatory region 582226	393 bp proximal
Rr582227	regulatory region 582227	440 bp proximal