rs38940739 SNP Detail

Summary

• ID
  rs38940739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65733713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCACTTAA TATTTTAGAA
  CTGTCTCTAA TATGAAGGAC AGCAACCAGC AATAAATGAA TGCATAGTTA GTCCAGCCAG
  ATTTAGTCAC CAAGTGTGTT GACTTGCAGT GTTTTCCTTT TGAGAGCATT CACATGTCAC
  AGTTGTGGCT GAAGGGTTGA CAGTCTGTAT TTGCATCAGC ACACCTGTTT TTATTGTTAG
  R
  TTGCTTCTCC TCAGCACCCT GTGTTTGCTT TTGTTTAAGA AACAATAAGA GAAATTATAA
  ATCAAAGCTA TGTGCTGCAG ACTCCGGAGA CGGTGTCTCC AGACAGTTAG CACAGTGGTG
  AGCTGTGGGG CGTCGGAGGA ACTGGGTACG GATCTTATGT AACCTTCTAA AATATTGGGA
  TTGTGGGTGA TCTTAAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50963800	NES13941966	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38940739					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50963800	NES13941966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65733713 () rs orientation: forward

Symbol	Name	Function Class
Lekr1	leucine, glutamate and lysine rich 1	Intron
Rr577736	regulatory region 577736	1107 bp distal
Rr577737	regulatory region 577737	1720 bp proximal