rs38940239 SNP Detail

Summary

• ID
  rs38940239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138859329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCTTT CAAATTCTAT
  ACCCGTTTAC TTTGCCTTTT GTCTTTGGTT ATCAGTTTCT GCTGCACAAA GGTTTGGTTA
  CTATTTAAAT GTGATTTCTA GCCTCCTAAG TTTAGACGAA GTACACGTGT GGATGGGCTC
  CTTCCATGTG ATTCCGTCTT ACTGGAGGCC TGCTCTACCA ATTGTCACTG GGTTCTTAGT
  Y
  ACATTTGCAA CCTGGATACT CTAACACGTG TAAGGGTAGG TCATGTCCCT AGGCTACACT
  GCCCTCCACA CTCTCTATGG GTCACAGGTT CCCACTGGGA CATAGCATAG TCACTAGAAA
  GGGTGGATCC CAGAATATGC ATTCCTTAAA CGTTCTTTTT TTTTTTTTCA TTTCAAGATA
  CTTTATTTTC AAAATGGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51203485	NES13817198	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38940239					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51203485	NES13817198	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138859329 () rs orientation: forward

Symbol	Name	Function Class
Gm31891	predicted gene, 31891	within coordinates
Rr623123	regulatory region 623123	1439 bp proximal