rs38938554 SNP Detail

Summary

• ID
  rs38938554
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91178827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AACCTGGAGG GTGGTAGAGA GCAGGCACAT GGACGACCCC
  GAAAAACCTG GAAAGCAGAG GGGAAGGGGA GAGGAAAGAG TCAGAAAGTG TCTTCTACTC
  R
  GAATGGAGAC ACAATTGGAG CCAAACCACC ATAAGGCCTT GCGGGCCAGG CTGCCGGGCG
  TGGGCTCTGT TTCTGGACTC AGGGGAACCA TGGGAGGGCT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51363727	NES13733068	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A		G	A	G	G
ss133382230	ENSMUSSNP280583	ENSEMBL	ENSEMBL_Sanger	f	SNP		G										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38938554					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51363727	NES13733068	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91178827 () rs orientation: forward

Symbol	Name	Function Class
Rr634420	regulatory region 634420	292 bp distal
Rr634421	regulatory region 634421	253 bp proximal