rs38936124 SNP Detail

Summary

• ID
  rs38936124
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131509984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGTTAA CTGGCTCAAA
  TGACAGTACC ACACCCTTAA TTTGATCTTT CCCATGAGTC ACTTTGTTCA ACAAAGGAAT
  TTTATTGGAC TTATTCTTCA AAGTCTTTAA AGAAATGCCA CTTCTTTCTA TGTCTAGGAA
  ATAATTTGGG GTGTGGTTGC CTAGAACACA GCTGACTAGA AGCACAAAGT ATTTGGACTC
  M
  CTCAGTATTT GAAGATGCTA ATCCCCAACC CCAAATAAAG CAGTAGTCTA GAAAGATTTT
  AATTGATGGT GCCAATGCAA ACATTGGAGC CCCAAAGTTT TGTTTGTAGG AGGCATGCTC
  CTCAATTCTC TCAAGATGGG GATTCTCCCA GAGGCAGGAT CAAGGGCTGA AAAAAGCTGT
  AGATGAGAGA AAGAACCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51638831	NES14654111	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38936124					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51638831	NES14654111	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131509984 () rs orientation: forward

Symbol	Name	Function Class
Rr375748	regulatory region 375748	1718 bp downstream
Rr585381	regulatory region 585381	1017 bp distal