rs38912847 SNP Detail

Summary

• ID
  rs38912847
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32306101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCTATG AGATTCCTGT
  GCTTCTCCAC AGGACTTAAG AGGACTACCT GTCCTCTAAG AAGGTTTTCT CACACTACCA
  AGAGGAGACC CTGTCACTCC AACCTTGCTC CTGTGCCCCC CTCATGCTCC TGCATTCCTG
  GCCCCAACGG AGTCAACTGT CCTGGTAAAA AGGTTCCACA GATGCGTGAC CCAGAGCTGC
  R
  CTGACAGATA TAGAACCAGA GCATCTCCCT TCAAAGACAG CATAGCATGA GACCCAAACA
  AAAGAGTCAC CCAAACAAAA GAGCACAACA CAGAGAGGCC CCCGAGACCG TGTATACCAG
  TTTACTCTGA CTACACTAAA ACAGATGGTT CCAGACTCAG AAAGGCTTTT CTCAAAATAC
  TCAAATTCTG AAGTCTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss51582894	NES14855680	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A
ss321777589	CHEV_6_32279166	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs38912847					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51582894	NES14855680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32306101 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628093	regulatory region 628093	1632 bp distal
Rr628094	regulatory region 628094	583 bp distal
Rr628095	regulatory region 628095	865 bp distal