rs38911662 SNP Detail

Summary

• ID
  rs38911662
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83576001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCACACAG GCACTATTCG
  CCTTGAGCTA TAGAGGGCGC AGTGGGGCCA AAGTCCGGCT GACAAATGGA GTTCTTCGGC
  AGCCTTCATT CAATGTCAAC ACAGTGAATT TGTATAATAG TTATGTATAT ATGCATGCAT
  TTGAGGGAAA TGGAAATGTT TTGTATAAAA CGACTATATA CATGTGTGAA AGTAAATACA
  M
  TGGGCCGCTA CACTGGGACA CTAGGGATGC TGGGGCAGAG AGTTCCTTGT TTTACTATTG
  TTCTGAATCT AGAGGCATCT TCAGGTCGCC CCGAGGTTGT GGGGACCGTC CCGCATTGTG
  TGCGATGCAT TTCGGCGCCC ACATGAGCCA GCGGCATCAC GTCTGCTGTG GGAGCTGGAT
  GTAGCTGTCT GTGCTGCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51353399	NES13744260	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38911662					SNP	A	A	A	A	A	A	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353399	NES13744260	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83576001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	10 bp proximal
Gm7424	predicted gene 7424	1788 bp downstream
Rr632898	regulatory region 632898	616 bp distal
Rr632899	regulatory region 632899	within coordinates
Rr632900	regulatory region 632900	157 bp distal
Rr632901	regulatory region 632901	721 bp proximal