rs38905039 SNP Detail

Summary

• ID
  rs38905039
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACTACA GCAATCCCAC
  GAAGACAAAC CACACCTTGA TCCCACTGCA GATACGGACT TTGGCCTTTT ACGTTGGTGA
  TCCAGACCTT TGGGTCTGAT AGGGAGGAGT GATTGTGCTT TCCACTGTGA GAAGGACTCG
  GGCTTGAGGG TCTGAGAGGA ATGCTATGAT TTAAATACGG TTAGCATCCT CCAAAACTCC
  W
  AAGGAAACAT TATCGGACAC TGGTGAGACC ATCAGAGGAG TCTTGTCATT AGGGCTGCGT
  CCTCATGAAG GGACCCGTGT GTTCTTGCAG GTGGTAGTTG GCTTGGGAGG CATGGATGGT
  TAAGAGCAGC TTGAGCAGAG GGAGCTCAGC TTCCTCTGGC CCTGCTTGCT TCTCCCACCA
  TGGAACCTTC TGCTCTTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51586205	NES14666180	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38905039					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586205	NES14666180	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181337 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	1233 bp proximal
Rr582220	regulatory region 582220	1713 bp proximal
Rr582221	regulatory region 582221	1968 bp proximal