rs38904892 SNP Detail

Summary

• ID
  rs38904892
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18438201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAAAAA TCATTCCATT
  CTATTAAGGC TAGACAATAC TCTACTAAGT ACATATACCT CATTTTCTTT ATCTGCTCAT
  TCGTTAATGG GCACCTAGGC CAATTGGATG TCTTAGTTGT TCTGAGTAGT ACTGTGGTAA
  CTCAAGTACT GTGGTAATTC CAGTTTCTGT AAGCCACATT AGATTCCTTC AGGCATCATA
  K
  ATTCAGGAGT GTTAGTTAGT TGCATTATTC TCTTAAATCT TGCAGATTAT TTATTTTCTA
  CCAGGAAGCA TGCGTCATGA AATTATGAAA GACTAAGGCA TACTTAGTCT TAGAGCTGGA
  ATGTATCAAT CAGGTTGGCA CACTCACCTC ACCTGTCCAA CTAAAGAACA TTTAGTGGTC
  CACAAGGGGT TTCATGGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	WSB/EiJ
ss51250469	NES13802042	PERLEGEN	MM_PANEL2	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	WSB/EiJ
rs38904892					SNP	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51250469	NES13802042	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18438201 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Gm67618	predicted gene, 67618			1865 bp downstream
Rr626924	regulatory region 626924			1489 bp distal