rs38896519 SNP Detail

Summary

• ID
  rs38896519
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72624591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGGGGG TCAGCAGAGA
  TGGTAGGCAG TGAAGAAGAT AGCTGAATCA GGGCTAACCA TCCTTCCCTG GGTCTGATTC
  AAGCCACTAG AGGGCGCCTG TACCTCATGC TTACATGCAA ATAGGACCTC GGAGATTAGA
  ACCACTGCCT TGACACAAGG ATTCAATAGT GTGGTGACAA GATACAGACC CTACCAGCAG
  W
  ACATTGCATG TCTTGGGACA GCCTACCCTG GGTGGCTGGC TCTGCCCCCA CATGGTTATT
  CCTGTCTACC TCCTGGCAGA GGGCTGTGGC AGTCACCCGA GAGCCGTACA TGACATCATG
  TTGTAGACGA CGAATAAGAC TAGGGCTCTC TCACTCAGAG CTGGTCCTGT GATTGCTGGA
  AACGACGAAA GTTCGTCGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51694809	NES14818975	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs38896519					SNP	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51694809	NES14818975	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72624591 () rs orientation: forward

Symbol	Name	Function Class
Rr632258	regulatory region 632258	1725 bp distal
Rr632259	regulatory region 632259	within coordinates
Rr632260	regulatory region 632260	100 bp distal
Rr632261	regulatory region 632261	508 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	Intron