rs38873537 SNP Detail

Summary

• ID
  rs38873537
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32035501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAGGCA AGAAGTCAAA
  CAGAGGATTT TAAAATTAGC TTCATGGTTG GCAAATTAGA AGAATTAGAA GAAGAAGATT
  ACACTCAAAG ATCTTCTCTT TAAATCTTCT CCTCTAGTTC AAGATCTGGA GTCACTCTAG
  AGGAGCGGTG AGTAAGAGAA AGCAAAGAGT CTGCAGAAAC AAGCCTGCTG CAGAAGAGGG
  Y
  GCAGAGAGAA GCCTGCTGCA GAAGTGGCTG CAGAGAGATG CCTGCTGCAG AGAGAAGCCT
  CCTGGCCAGA GAAGCCTGCT GGAGAAGTGG CTGCAGAGAG ATGCCTGCTG CAGAAATGAC
  TGCAGAGAGG AGAAGGTTGC TGTAAAAGCC ACTGTAGAGA CAAGTGTAGC ACCTTATCAG
  GGCCAAGAAG CCACCTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51586548	NES14850093	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38873537					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51586548	NES14850093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32035501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700012A03Rik	RIKEN cDNA 1700012A03 gene			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm67015	predicted gene, 67015			495 bp upstream
Rr628076	regulatory region 628076			1559 bp distal