rs38870534 SNP Detail

Summary

• ID
  rs38870534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:36820790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAATCA GAAGACTCAC
  TGATTATGGT CTTTATGACT CTGAAAATCT CTAATGTCAT GTGCGACTGT AGCGATTCAG
  AGATAGATGT AAGCTCAAGA ATAGAGAAAA CAACAATGAA AAGAAAATCC TGTTTCTTTA
  CCAATCATTA CCTATGAGTA TTAACTATAC ACGTAAAGAT GATTTGCATG CTTTTAAGAT
  R
  TCTTTTCTAA ACATATGCAA TATGTGCGTA TGACACATAT GCCCATATAT GTATACAAAT
  AAATACATTT CTATTTATGT ATGGTGGATA TATGTGGCAT GTACAGATAT GTGTGTATAT
  GAATGAGAAA TTTCTGACAT AACACACAAG CAAGCATGTT TGTCCACATT GACAGTGATT
  CTTGCTGGGT ACTGAGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51285889	NES13783668	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38870534					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51285889	NES13783668	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:36820790 () rs orientation: forward

Symbol	Name	Function Class
6430604M11Rik	RIKEN cDNA 6430604M11 gene	within coordinates
Rr628572	regulatory region 628572	1810 bp distal
Rr628573	regulatory region 628573	978 bp distal
Rr628574	regulatory region 628574	317 bp distal
Rr628575	regulatory region 628575	470 bp proximal
Rr628576	regulatory region 628576	1427 bp proximal