rs38866663 SNP Detail

Summary

• ID
  rs38866663
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83448646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTTAGG GGACAGTCTC
  TCATGTCAGC CAGGCTAGAA ACCAGGAGCA GCTGCCAGTT GGAGTGGGCA TGTAGGCCCC
  TTCTTTGGTC TGCTGTTTTC CAGCTCAACC AGACATGGTT GTCTCTGGCT CCTTTAAAAT
  GAGCTGCCTA ACTGAGCCTT CATCCGTGTG TCTACACAAT GGGAGGGTCT AATGACTGCT
  R
  TGAGAGCTGT GATTCAAGGA CAGCATAAAC CAGATAAAGT ATTAATGTCA CAGAGAGCAT
  TTAGAATATC CTTGTTAGAG TCTGGAAATC TGGGTGTCAG CGGTTCTCTC TGATCGACGG
  AATATCCTTG ACAACATGGG AACGCATGCT AACATGGCTT TCTTCTTCAG CTCTGTCAAT
  CTTGTGCCGT CATTTAACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51354933	NES13746938	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38866663					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51354933	NES13746938	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83448646 () rs orientation: forward

Symbol	Name	Function Class
D6Mit128	DNA segment, Chr 6, Massachusetts Institute of Technology 128	342 bp distal
D6Mit1006	DNA segment, Chr 6, Massachusetts Institute of Technology 1006	304 bp distal
Rr632872	regulatory region 632872	228 bp proximal
Rr632873	regulatory region 632873	1512 bp proximal