rs38863413 SNP Detail

Summary

• ID
  rs38863413
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:66060343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCATTTGA AATCTGGTGC CTGTGGAGCT AAGTTATCCA
  TGTTCCTCTG CTACCAAACT TTCTCTCTGT CCCACCAACC CTGGGTACCA GTACTTCAAC
  W
  GCAGCAGAGA CCAAGATACA GTTTTTGTCT TCTTGTTCTG TTTAAATGAG ATTTGATGAC
  AACCAGAGAT TGTTTGCTTC TCTATAGGGC TGTCACACAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ
ss51538508	NES14687559	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ
rs38863413					SNP	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51538508	NES14687559	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66060343 () rs orientation: forward

Symbol	Name	Function Class
Rr577797	regulatory region 577797	840 bp proximal
Veph1	ventricular zone expressed PH domain-containing 1	Intron