rs38853232 SNP Detail

Summary

• ID
  rs38853232
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86771581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGTAATT ACATGCAGGG GAGGTGGGGT GGGGGGTGGA
  TAAAGGTTAG TGTCTAGGAA CTGTAGTTAG CCCACAGCTA AGCTGATCTT TATAGCAAGT
  R
  CAACCAGGCC ACAGGCCTCT GATGTCACTT CTCCCAAAGT CTGCCCTAGC CCAGGTAGGG
  AAGCCACAGA CAGAGGCTTT TACTATTACA TATAAATACG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51749410	NES14799923	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38853232					SNP	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51749410	NES14799923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86771581 () rs orientation: forward

Symbol	Name	Function Class
Anxa4	annexin A4	1015 bp upstream
Cpgi17670	CpG island 17670	726 bp distal
Rr633515	regulatory region 633515	1026 bp distal
Rr633516	regulatory region 633516	525 bp distal
Rr633517	regulatory region 633517	367 bp proximal
Tssr61864	transcription start site region 61864	1017 bp upstream
Tssr61865	transcription start site region 61865	998 bp upstream
Tssr61866	transcription start site region 61866	1093 bp downstream
Tssr61867	transcription start site region 61867	1969 bp downstream