rs38849988 SNP Detail

Summary

• ID
  rs38849988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66653225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGTGGT CTAGTGGCCA
  CAGCAAAATT CTGCTTCTTG TGTATGAGAA AGAAATTTTA CACACAGGCA GCTAGTCTGA
  CAGCAACCCA AATGGTTCTA TATTGATTAT TCCATTAAAA AAATAACAAC TAAATAAGAC
  ATGAGAATCT GGCTGAGAGT GTCTCGAGGT GGGTACATTT TTGTATGTGT GAAAATAGGG
  Y
  GTGCAACTGT TCACACACTA AAACTGGAAG AGAATTGCTT TAAAAAAAAT AAATAAATTC
  TCCCTGGCAA GGAAATACAT GAGTCTTCTG AGCCTGTCGA TAAGAAATTG TGACTCGTGA
  CACAAAATAT TTTCGTTTTA TTTATACCTG AGATTTCTTT TCTTACATCA TTTCACTTAT
  TGGGAGGGAT TTTTAGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50973492	NES13938139	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38849988					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50973492	NES13938139	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66653225 () rs orientation: forward

Symbol	Name	Function Class
Gm65053	predicted gene, 65053	within coordinates
Rr577864	regulatory region 577864	1308 bp distal
Rr577865	regulatory region 577865	275 bp proximal
Rr577866	regulatory region 577866	1711 bp proximal