rs38847463 SNP Detail

Summary

• ID
  rs38847463
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15187035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGTATAA ACACAGCCAG
  AGGCTCACAC GGTTTCCTGC ACTTTTCCCA CTGACATGAG CAAGTTCTCC CTGCAAACAC
  CAACAGCTTT TTCCTCCGAC CAGTTTGACA TTCCTCATCT TCAGGTAATA AACCCTAAAT
  TCTACCCGTG TATTTTCACT TGGCGGGAGC TTAAGTGACA GGGTTTTGTT TGGTCCTTTC
  Y
  GTGACCATAA AAAAAAAGCA GCCGTCTCCA TAATGATGTG TGTTTAGAGC TGGGGTTGAA
  TCGCTTTCAC TGTCACCAGG CTGTGTAATA GAAAACTTTC GTTCTTGCTT CTCAGTCATC
  GTTTACCTTT GAACTGTTCT GACTTTAAAT TTTATTATCT GCAGTTAGTT CACTGTGCCC
  TCTCCAAGGC CTGCTTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51242615	NES13801222	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38847463					SNP	T	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51242615	NES13801222	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15187035 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr406279	regulatory region 406279			287 bp proximal
Rr626648	regulatory region 626648			1520 bp distal
Rr626649	regulatory region 626649			629 bp distal
Rr626650	regulatory region 626650			within coordinates
Rr626651	regulatory region 626651			904 bp proximal
Tssr54978	transcription start site region 54978			1792 bp downstream
Tssr54979	transcription start site region 54979			1643 bp downstream
Tssr54980	transcription start site region 54980			1584 bp downstream
Tssr54981	transcription start site region 54981			1516 bp downstream
Tssr54982	transcription start site region 54982			1441 bp downstream
Tssr54983	transcription start site region 54983			1410 bp downstream
Tssr54984	transcription start site region 54984			1381 bp downstream
Tssr54985	transcription start site region 54985			1371 bp downstream
Tssr54986	transcription start site region 54986			1177 bp downstream
Tssr54987	transcription start site region 54987			192 bp downstream
Tssr54988	transcription start site region 54988			140 bp downstream
Tssr54989	transcription start site region 54989			123 bp downstream