rs38840542 SNP Detail

Summary

• ID
  rs38840542
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:6085720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGTATTG TAACCATGGG
  AAACATTTTA AATCTGAATT GTAATTTGCA ATTTGGAAGG TATAGTTAAA GCAGAAACAA
  AAACTAAGGG GATTAATTAT AATTTTTACT ACTATATTGC TGGCCCCAGA AATGTTTTTA
  TTATGTGATT TTAATGTAAA ATAATTTGAC TTTTTAAGAA AAAGCCAGTA CTTATTAGGT
  K
  CAGTAATTTT CGAGTAATTG TATCATTAAA ATAACAAAGC CAGGTTATTA TGAATTTATT
  CCTGCAATTC TCTCTGTGCC TTACACAGAC ATAGTGGCAT GCAGGCACAT GTAAGTATAC
  ACACACACAC ACTCACTCAC ACACACACTA TACATGTAAA AATAATGAAA CTAATAGATT
  AAATGACAAC CCACATATTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51428570	NES14450547	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T	G	G	G	G		G	G	G
ss134546151	ENSMUSSNP3431797	ENSEMBL	ENSEMBL_Sanger	f	SNP		G										T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38840542					SNP	G	G	T	T	T	G	T	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51428570	NES14450547	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:6085720 () rs orientation: forward

Symbol	Name	Function Class
Rr573206	regulatory region 573206	1547 bp distal