rs38836933 SNP Detail

Summary

• ID
  rs38836933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72626007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTCCTGCC ACCGGGACTT CCCCACCAGA TAGCCGGTCC
  CACCAAACCG TGAGCCAAAA CCAACCCTTC CTCCGTTAAG GCAGATATTT TAGCACAGCC
  R
  TGAGAAAAGC GAGACACCAA GGAGACAGAC TCAGGAAGCT TCTGGAATGG GGAAAGGAGT
  CACAGACAGG GCCCAGGAAG CTAAGGCAGA CTCACCAAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NZW/LacJ
ss51694794	NES14818891	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NZW/LacJ
rs38836933					SNP	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51694794	NES14818891	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72626007 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632259	regulatory region 632259			1064 bp distal
Rr632260	regulatory region 632260			1516 bp distal
Rr632261	regulatory region 632261			80 bp distal
Rr632262	regulatory region 632262			1035 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)			Intron
				Noncoding-Transcript-Variant