rs38830395 SNP Detail

Summary

• ID
  rs38830395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31092456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAGATAAT AACCGTTGGA GGTTTGTGCA AGGCTACTTT
  TCAGTATTAT TTGAAGACCA TAGAATACAG AACGTCATCA AATGAAACAC AAGCTGCAGT
  Y
  CCTTGCAAAC ACAGGTTTTC TCTCTCGCAC AGTGCTGTGT AGCCCTGGCA AACCTTGGAC
  TCACCTGGGC TCCACAGCAG CTCTGTAGAT CCAAGGGGGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260131	NES13793999	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38830395					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260131	NES13793999	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31092456 () rs orientation: forward

Symbol	Name	Function Class
Gm56937	predicted gene, 56937	1096 bp downstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627887	regulatory region 627887	1776 bp distal
Rr627888	regulatory region 627888	1379 bp distal
Rr627889	regulatory region 627889	246 bp distal
Rr627890	regulatory region 627890	892 bp proximal
Tssr55448	transcription start site region 55448	1741 bp downstream
Tssr60155	transcription start site region 60155	701 bp upstream
Tssr60156	transcription start site region 60156	470 bp upstream
Tssr60157	transcription start site region 60157	417 bp upstream