rs38826837 SNP Detail

Summary

• ID
  rs38826837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:34688456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAGAGC TCACTTCTGT
  AATACAGCAA AGTTTTCCTT TGGTATTCCT TCTCACTGTG AGTGCTCCTG CTCCAGCCAA
  ATTAGATGGC TTGTCACCCC CAAACCAGCA TGTACAGGCT GTCCACACCT CTTCACACGC
  TTGCTGCCTT CCTCCCCGCT CTCCACTCTC ATAACCTGTG TGCATCCTTT GATTAGTAGC
  Y
  TGGTGTCAAA CATGTCTGTT TTCTGACAGT AATGCATTTG ATGGCAGGAA CTGTTTTGAA
  TCTTCAGCAC ACACACACAC ATACACACAT GCGCGTGCAT ATGGATTCAT AGATAAAACT
  TCATATTAAG TTTTTCACAA CTGAAGAACT CTAACTCACT TTCTAGAAAT TTCTACTCTG
  TGTTTCCGTC AGTCATTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51270951	NES13789537	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38826837					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51270951	NES13789537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34688456 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cald1	caldesmon 1			Intron
				Noncoding-Transcript-Variant
Gm38787	predicted gene, 38787			774 bp downstream
Rr628363	regulatory region 628363			1877 bp distal
Rr628364	regulatory region 628364			883 bp distal
Rr628365	regulatory region 628365			1693 bp proximal
Tssr55524	transcription start site region 55524			1979 bp downstream
Tssr55525	transcription start site region 55525			1935 bp downstream
Tssr55526	transcription start site region 55526			1886 bp downstream
Tssr60240	transcription start site region 60240			1641 bp downstream