rs38800252 SNP Detail

Summary

• ID
  rs38800252
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143220853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAAGAAC AATCTTTTTA
  TTTACTAATA GTCTCAAGAT TGTCTTCCCA CAGAACTCTA GGTCCTAGTA ATCAAATCTC
  AACCCTGGAA CTACACAGGT GTTCATAACC TAACATTGCC CTGGGAAAGT TGCATGCTCC
  CCTCTAGAAT GTTAGCTGTC TCTTCTAGAA AACAGAGATG GTAATCCAAG TGCTGCTGAA
  S
  GTTGAATGGA AGCATTTAAA ATTGTTGTTG AAGACTTCAT TTTGGCTCTG TTGAGCATTT
  GCTAATGTAT TTGCTTGCTC TGCCATCATT GATGTGCAGT CTCAAGGTCC TGGCCAAAAA
  CAATGACAGA GACAGAGTCT CTAATCACAA AATATGAGGG AGACTGAATG AGAGATTAGG
  AGAGGCATCT ATAATATGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51665381	NES14649480	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38800252					SNP	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665381	NES14649480	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143220853 () rs orientation: forward

Symbol	Name	Function Class
Rr586538	regulatory region 586538	1978 bp distal