rs38792983 SNP Detail

Summary

• ID
  rs38792983
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:88365233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCTGTG GCACCCTCCT
  AACGGCCTCA GACACACACA TGTCCTGGAA GATGTGTGCC ACAGGCCACA GGAAACCGTC
  CTTTTTTGTA GAGAAGCCAC AGCAAGGCAG TCTTCACTAG CCTTAAGCTG GAAGTGCAGA
  AAGGCCAGGA CTGAGGACCG AGCTCTACCA TAGAGAAGCA TAGCCAGAGG TAACAGGCTG
  W
  CAGGGCCAGT GAAAGAGCAG CTGGAAAAAC TGCCTGGAGA GCGCAGACAA AAAAAAAAAA
  GGGGGGGGGG GGCACAGGGG GAGAAGAAAG GACAGGATCA ACCATAAAAA GCAAGTAAAA
  TCAGCAGAAT TCCTTCATGA AAAGGATGGA ATTAGCATAC GGCCTCAGCT GCCAAGTGAG
  GCCATTGAAG CAAGCAATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51359425	NES13741573	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38792983					SNP	T	T	T	T	T	T	A	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51359425	NES13741573	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88365233 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eefsec	eukaryotic elongation factor, selenocysteine-tRNA-specific			Intron
				Noncoding-Transcript-Variant
Rr633881	regulatory region 633881			within coordinates
Rr633882	regulatory region 633882			732 bp proximal