rs38787047 SNP Detail

Summary

• ID
  rs38787047
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8240648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGAATATAA ATATTAAGCA ACTATACATT TGAGAGATGT
  CTGTTGCAAA AAACAATCTT AAATCTTCTG ATTTTCCATT CATCAAAAAG GGAGTGTAGA
  W
  AAAAATAACA GACTACACAG ATTGGCTTCT CTGACCTCCA CACTTTGGAA GACAGGTAGC
  CAGGCTGGCC TCGAGCACAC GATCTTTATC TGTGCCTTCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ
ss51553779	NES14865250	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ
rs38787047					SNP	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51553779	NES14865250	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8240648 () rs orientation: forward

Symbol	Name	Function Class
Rr626362	regulatory region 626362	327 bp proximal