rs38787041 SNP Detail

Summary

• ID
  rs38787041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112989998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACGGGA GAGAGGTTTT
  GGCCACACAT TTCCCTAAGG AGATGTGCCA GGCAGGCTAC ACGAGGCTTA CAGGCTCCCA
  GAGATGAAGT ATATAAAGCT TTAAGATCAT GTTGGCCTGT AATGAATTCC TTTTCCAAAT
  TTACTTACTA AAGGGTCTGT TTCTCACCCC CCAGTTTCCT TTCAGAAACT GGAGCCTAAG
  Y
  GAAGCGAAAT ACAATTGGAA TCGCTGCAAG GAAACTTCTG GAGGGAAACA AACTACCTGG
  CTTCCTAGGA GGGGCTTCTA ACGTGCAGAT GCCTCCAAGC AGAAGCCAGT CACACGTCAA
  ATGTACAGAG GGAACTGAGA GACTGAGGTG TAAATAAGAA AATCAAAATG GTGTGCAGTG
  GTGGTTCTCA CACTGCGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51844068	NES14767499	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38787041					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51844068	NES14767499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112989998 () rs orientation: forward

Symbol	Name	Function Class
Rr636433	regulatory region 636433	within coordinates