rs38778654 SNP Detail

Summary

• ID
  rs38778654
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8415083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGACAGCA ATCCAGAAAG
  AAATCCTTAA ATCCTTTCAG TTTGGCCCCA AATTTCACCT CCAAACTGAA TTTGCTATTT
  TCAAACAATG ATATTCACAA TTATTTTAAT ATATTTAGTA TGGTTATTCT TATTCTGTTC
  ATAATACTGA TACTAAATTT TCTACATTTG TTACAAATCA TAGAATCTAA TCTGTTGTAT
  W
  TTTTTTTACT CTAAGAACGT CAATATTAAA TTCTTAATTC CTATAGAGCT ATAACTTCTG
  AAAAGATGAA ATGGCCTGCC ATTTTTCTCA TTAGCTAAGT GTTTGTTTCT TACATATTCA
  AGACCACTAT AAAGATGGGC ATTCTTCCAT TATAGAAATT CTTTTCATAA CTTGAGTTTG
  CACACTCCTT GGCCACTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51551487	NES14868294	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	A	A	A	A	A	A	A
ss132968414	ENSMUSSNP3211700	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38778654					SNP	T	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51551487	NES14868294	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8415083 () rs orientation: forward

Symbol	Name	Function Class
1810015A16Rik	RIKEN cDNA 1810015A16 gene	within coordinates
Gm45062	predicted gene 45062	Intron
Rr626390	regulatory region 626390	1502 bp distal
Rr626391	regulatory region 626391	393 bp distal
Rr626392	regulatory region 626392	1838 bp proximal
Umad1	UMAP1-MVP12 associated (UMA) domain containing 1	Intron