rs38777891 SNP Detail

Summary

• ID
  rs38777891
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77591439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATTTTGGA AGTGCGTGAT TTGGGTGCTT TAAGGCATGG
  CTTCAGAACT CAGCTAAGAA CCGGGGCCTG CTAGCAACTT GGAGTGACAT CACTGTCAGG
  W
  GTCAGGAGCC TTGTGTAAGC TCACTAGTTG TGAACTCCTG CTGATGCCCT CTGAAAACCC
  AGGACACCCC CAATTCTTGG AGCAAGAACA CTAGGCTCCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50501556	NES13695680	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38777891					SNP	A	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50501556	NES13695680	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77591439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			1197 bp distal
Rr541132	regulatory region 541132			1143 bp distal
Rr541133	regulatory region 541133			1196 bp proximal