rs38777730 SNP Detail

Summary

• ID
  rs38777730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:49797750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTCTTCA TTTCCTGTTA TAACATCACA CTGAGTCCCA
  CTTTGCCTGA TGTTCTGAGC ATCCTGTGAG AAATCTATTC AATCGGAGCT TGATCAGATA
  Y
  CCCACATATC CAGATGACTG AATCCCATTT AACTCTAACT CCTAAATGTC TTTATTTCTT
  TACCTACTTA CATATATATT ATTTTATTTA TGTTATTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51521359	NES14699134	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38777730					SNP	T	T	C	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51521359	NES14699134	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:49797750 () rs orientation: forward

Symbol	Name	Function Class
Rr576114	regulatory region 576114	771 bp distal