rs387745969 SNP Detail

Summary

• ID
  rs387745969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52813919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TCCTTCCTTC CTTCCTTCCT
  Y
  CCTCCCTCCC TCCCTCCCTC CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SPRET/EiJ
ss916112744	MGP_WTSI_3_52906498	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SPRET/EiJ
rs387745969					SNP	C	T	C	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916112744	MGP_WTSI_3_52906498	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52813919 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	258 bp downstream
Rr576600	regulatory region 576600	767 bp proximal
Rr576601	regulatory region 576601	856 bp proximal