rs387702250 SNP Detail

Summary

• ID
  rs387702250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139972596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC CCACCCCCTA CCCCCACCCC
  Y
  GCCCCCACCC TCTGGAATCC CCCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss917111217	MGP_WTSI_4_140245285	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs387702250					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917111217	MGP_WTSI_4_140245285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139972596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15189	CpG island 15189	1653 bp distal
Cpgi15190	CpG island 15190	456 bp distal
Cpgi15191	CpG island 15191	533 bp proximal
Gm69798	predicted gene, 69798	1119 bp upstream
Gm69835	predicted gene, 69835	1634 bp downstream
Igsf21	immunoglobulin superfamily, member 21	Intron
Rr603404	regulatory region 603404	1067 bp distal
Rr603405	regulatory region 603405	130 bp proximal
Rr603406	regulatory region 603406	1489 bp proximal
Tssr44245	transcription start site region 44245	1466 bp downstream
Tssr44246	transcription start site region 44246	1509 bp downstream
Tssr44247	transcription start site region 44247	1633 bp downstream