rs38765760 SNP Detail

Summary

• ID
  rs38765760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72625340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGATAG CCTGGCAGGC
  ATCCGCGGAG CCTGGCTTTA CTTCCTGGAA GACGGAATGC GAGGGTTAGA TTCCAGCCTC
  ATCTTTTATA TGCATTGTGT GCCAGTGCTG GGTCATGAGA AGGCAAGGAG CCCTGCTGGG
  ACTCCACTGC TCCTGGCTCC CCTTTCCTCC AAGACCCAGT GTTGCCACAG CTGTGCGTGC
  R
  GAGCAGCCGT TGGCCACATT TAAATGGATG CTTCCCTGAA ACAGCTGGTA GAGAGGAGCC
  CCCTTAACTG CAGTCTTCCA GCTCCAGGGA GAAGAGGAGG GTTTCTGAAT GAACCAACTG
  GACAGAAAGG ACCTCTTGTT CATAGGAAGT GGGGAAGGAT TTGAAGCAGG TGGCCAGGAA
  GAACCGGGGT TAATGGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51694806	NES14818977	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38765760					SNP	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51694806	NES14818977	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72625340 () rs orientation: forward

Symbol	Name	Function Class
Rr632259	regulatory region 632259	397 bp distal
Rr632260	regulatory region 632260	849 bp distal
Rr632261	regulatory region 632261	within coordinates
Rr632262	regulatory region 632262	1702 bp proximal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	Intron