rs38764771 SNP Detail

Summary

• ID
  rs38764771
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31089847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAACAA CTTACTCCGC
  TTCCCAGCTG CAAGCAGGTT GTGTTCTGGC TGCCCGGCAA CTGCTTCTCC TCAAGGCCCT
  GGTTTCATTA CAAAAGCTGT GCCTGGACTC ATACAGCCAG GTTTACTGTG GAACAACACC
  AAAGCGCCTG CCCGCCTATC GATGCCACAA GTTCACAATT CATTTCAGAG CTACTGAAGA
  Y
  ACTTTTGAGA ACAAGGAATC CCCAGCGCAG ACAGAGATGA CCTCTGGATG TCACGTGGTC
  TCACTGCTGT TGTCACTCAC TACACACAGA CAGACACAGA CACACAGAGA CACACACTTG
  TTACCTCCAG AACCCTGTGG CCAGCCCAGC CTAACTGCGC CTATAAACAT TGAGAGACAC
  CACTCTCTGG CACTCTCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51260173	NES13793975	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38764771					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51260173	NES13793975	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31089847 () rs orientation: forward

Symbol	Name	Function Class
5330406M23Rik	RIKEN cDNA 5330406M23 gene	1992 bp upstream
Gm56937	predicted gene, 56937	823 bp upstream
Lncpint	long non-protein coding RNA, Trp53 induced transcript	within coordinates
Rr627885	regulatory region 627885	within coordinates
Rr627886	regulatory region 627886	128 bp proximal
Rr627887	regulatory region 627887	664 bp proximal
Rr627888	regulatory region 627888	834 bp proximal
Rr627889	regulatory region 627889	1476 bp proximal
Tssr55448	transcription start site region 55448	858 bp upstream
Tssr60154	transcription start site region 60154	561 bp downstream
Tssr60155	transcription start site region 60155	1890 bp downstream